Publications

A full list of Adam’s peer-reviewed publications. Also available on Google Scholar.

References

Grace IJ, Génio L, Eggleston DB, Puckett BJ, Fodrie FJ, Smith ANH, et al. (2026) Shell Trace Elemental Fingerprints of the Deep-Sea Methane Seep Mussel Gigantidas Childressi Vary by Depth, Site, and Shell Growth Region. Deep Sea Research Part I: Oceanographic Research Papers 228:104655.

Elsmore TJ, Morgan K, Fluen T, Thompson D, Smith ANH (2025) Same-Day Echocardiography in Dogs Sedated with Intravenous Dexmedetomidine Followed by Reversal with Intramuscular Atipamezole. Journal of the American Veterinary Medical Association:1–8.

Samayoa AP, Aguirre JD, Smith ANH, Liggins L (2025) Centres of Species Richness, Neoendemism, and Paleoendemism for Marine Fishes Occur in Different Regions of Aotearoa New Zealand. Frontiers of Biogeography 18:e134560.

Kolisnik T, Keshavarz-Rahaghi F, Purcell RV, Smith ANH, Silander OK (2025) pyRforest: A Comprehensive R Package for Genomic Data Analysis Featuring Scikit-Learn Random Forests in R. Briefings in Functional Genomics 24:elae038.

Lukaszewicz G, Tikekar A, Jerram R, Thompson D, Coomer A, Nawrocki M, et al. (2025) Computed Tomography Versus Radiography for Assessment of Canine Humeral Condylar Fracture Malreductions. New Zealand Veterinary Journal.

Sweatman JA, Aguirre JD, Smith ANH, Liggins L (2025) Using the Size Structure of Populations to Infer Range Dynamics and the Frequency of Recruitment. Ecology and Evolution 15:e71603.

Skirrow MJA, Ortiz-Catedral L, Smith ANH (2024) How to Count Parrots: Comparing the Performance of Point and Transect Counts for Surveying Tasman Parakeets (Cyanoramphus Cookii). Diversity 16:698.

Reyes EMR, Roper MM, Sevilla C, Rueda D, Brunton DH, Smith ANH, et al. (2024) Cultural Divergence and Morphological Variation of Isolated Remnant Populations of the Endangered Floreana Mockingbird. Pacific Conservation Biology 30.

Smith HL, Biggs PJ, French NP, Smith ANH, Marshall JC (2024) Lost in the Forest: Encoding Categorical Variables and the Absent Levels Problem. Data Mining and Knowledge Discovery 38:1889–1908.

Goetze JS, Heithaus MR, MacNeil MA, Harvey E, Simpfendorfer CA, Heupel MR, et al. (2024) Directed Conservation of the World’s Reef Sharks and Rays. Nature Ecology & Evolution 8:1118–1128.

Freed NE, Smith ANH, Breckell G, Dale J, Silander OK (2023) Nanopore Sequencing of Metagenomic DNA from Rat Stomach Contents to Infer Diet. New Zealand Journal of Ecology 47:3554.

Palmer EI, Betty EL, Murphy S, Perrott MR, Smith ANH, Stockin KA (2023) Reproductive Biology of Male Common Dolphins (Delphinus Delphis) in New Zealand Waters. Marine Biology 170:153.

Kolisnik T, Sulit AK, Schmeier S, Frizelle F, Purcell R, Smith ANH, et al. (2023) Identifying Important Microbial and Genomic Biomarkers for Differentiating Right- Versus Left-Sided Colorectal Cancer Using Random Forest Models. BMC Cancer 23:647.

Simpfendorfer CA, Heithaus MR, Heupel MR, MacNeil MA, Meekan M, Harvey E, et al. (2023) Widespread Diversity Deficits of Coral Reef Sharks and Rays. Science 380:1155–1160.

Reyes EMR, Smith ANH, Rueda D, Sevilla C, Brunton DH, Ortiz-Catedral L (2022) Sexing of the Endangered Floreana Mockingbird (Mimus Trifasciatus) Using Morphometric Measurements. Notornis 69:256.

Filander Z, Smith ANH, Cawthra HC, Lamont T (2022) Benthic Species Patterns in and Around the Cape Canyon: A Large Submarine Canyon Off the Western Passive Margin of South Africa. Frontiers in Marine Science 9.

Palmer EI, Betty EL, Murphy S, Perrott MR, Smith ANH, Stockin KA (2022) Reproductive Biology of Female Common Dolphins (Delphinus Delphis) in New Zealand Waters. Marine Biology 169:158.

Smith CE, Smith ANH, Cooper TF, Moore FB-G (2022) Fitness of Evolving Bacterial Populations Is Contingent on Deep and Shallow History but Only Shallow History Creates Predictable Patterns. Proceedings of the Royal Society B: Biological Sciences 289:20221292.

Betty EL, Stockin KA, Hinton B, Bollard BA, Smith ANH, Orams MB, et al. (2022) Age, Growth, and Sexual Dimorphism of the Southern Hemisphere Long-Finned Pilot Whale (Globicephala Melas Edwardii). Journal of Mammalogy:gyab165.

Skirrow MJA, Smith ANH, Ortiz-Catedral L (2022) Estimating the Population Size of Orange-Fronted Parakeets (Cyanoramphus Malherbi) on Offshore Islands of New Zealand. New Zealand Journal of Zoology 49:225–235.

Cresswell AK, Ryan NM, Heyward AJ, Smith ANH, Colquhoun J, Case M, et al. (2021) A Quantitative Comparison of Towed-Camera and Diver-Camera Transects for Monitoring Coral Reefs. PeerJ 9:e11090.

Adegoke NA, Smith ANH, Anderson MJ, Pawley MDM (2021) MEWMA Charts When Parameters Are Estimated with Applications in Gene Expression and Bimetal Thermostat Monitoring. Journal of Statistical Computation and Simulation 91:37–57.

Howarth OR, Liggins L, Smith ANH (2021) Using Qualitative Data to Classify Reef Fishes into Dietary Guilds. Austral Ecology 46:982–990.

Smith ANH, Acuña-Marrero D, Salinas-de-León P, Harvey ES, Pawley MDM, Anderson MJ (2020) Instantaneous Vs. Non-Instantaneous Diver-Operated Stereo-Video (DOV) Surveys of Highly Mobile Sharks in the Galápagos Marine Reserve. Marine Ecology Progress Series 649:111–123.

MacNeil MA, Chapman DD, Heupel M, Simpfendorfer CA, Heithaus M, Meekan M, et al. (2020) Global Status and Conservation Potential of Reef Sharks. Nature 583:801–806.

Langlois T, Goetze J, Bond T, Monk J, Abesamis RA, Asher J, et al. (2020) A Field and Video-Annotation Guide for Baited Remote Underwater Stereo-Video Surveys of Demersal Fish Assemblages. Methods in Ecology and Evolution 11:1401–1409.

Betty EL, Stockin KA, Smith ANH, Bollard B, Orams MB, Murphy S (2019) Sexual Maturation in Male Long-Finned Pilot Whales (Globicephala Melas Edwardii): Defining Indicators of Sexual Maturity. Journal of Mammalogy 100:1387–1402.

Adegoke NA, Abbasi SA, Smith ANH, Anderson MJ, Pawley MDM (2019a) A Multivariate Homogeneously Weighted Moving Average Control Chart. IEEE Access 7:9586–9597.

Adegoke NA, Smith ANH, Anderson MJ, Sanusi RA, Pawley MDM (2019b) Efficient Homogeneously Weighted Moving Average Chart for Monitoring Process Mean Using an Auxiliary Variable. IEEE Access 7:94021–94032.

Acuña-Marrero D, Cruz-Modino R de la, Smith ANH, Salinas-de-León P, Pawley MDM, Anderson MJ (2018a) Understanding Human Attitudes Towards Sharks to Promote Sustainable Coexistence. Marine Policy 91:122–128.

Acuña-Marrero D, Smith ANH, Salinas-de-León P, Harvey ES, Pawley MDM, Anderson MJ (2018b) Spatial Patterns of Distribution and Relative Abundance of Coastal Shark Species in the Galapagos Marine Reserve. Marine Ecology Progress Series 593:73–95.

Adegoke NA, Smith ANH, Anderson MJ, Abbasi SA, Pawley MDM (2018) Shrinkage Estimates of Covariance Matrices to Improve the Performance of Multivariate Cumulative Sum Control Charts. Computers & Industrial Engineering 117:207–216.

Adegoke NA, Riaz M, Sanusi RA, Smith ANH, Pawley MDM (2017) EWMA-Type Scheme for Monitoring Location Parameter Using Auxiliary Information. Computers & Industrial Engineering 114:114–129.

Ullah I, Pawley MDM, Smith ANH, Jones B (2017) Improving the Detection of Unusual Observations in High-Dimensional Settings. Australian & New Zealand Journal of Statistics 59:449–462.

Smith ANH, Anderson MJ, Pawley MDM (2017) Could Ecologists Be More Random? Straightforward Alternatives to Haphazard Spatial Sampling. Ecography 40:1251–1255.

Le Port A, Montgomery JC, Smith ANH, Croucher AE, McLeod IM, Lavery SD (2017) Temperate Marine Protected Area Provides Recruitment Subsidies to Local Fisheries. Proceedings of the Royal Society B: Biological Sciences 284:20171300.

Acuña-Marrero D, Smith ANH, Hammerschlag N, Hearn A, Anderson MJ, Calich H, et al. (2017) Residency and Movement Patterns of an Apex Predatory Shark (Galeocerdo Cuvier) at the Galapagos Marine Reserve. PLOS ONE 12:e0183669.

Pearson S, Windupranata W, Pranowo SW, Putri A, Ma Y, Vila-Concejo A, et al. (2016) Conflicts in Some of the World Harbours: What Needs to Happen Next? Maritime Studies 15:10.

Smith ANH, Anderson MJ (2016) Marine Reserves Indirectly Affect Fine-Scale Habitat Associations, but Not Overall Densities, of Small Benthic Fishes. Ecology and Evolution 6:6648–6661.

Godoy DA, Smith ANH, Limpus C, Stockin KA (2016) The Spatio-Temporal Distribution and Population Structure of Green Turtles (Chelonia Mydas) in New Zealand. New Zealand Journal of Marine and Freshwater Research 50:549–565.

Aguirre JD, Bollard-Breen B, Cameron M, Constantine R, Duffy C, Dunphy B, et al. (2016) Loved to Pieces: Toward the Sustainable Management of the Waitematā Harbour and Hauraki Gulf. Regional Studies in Marine Science 8:220–233.

Smith ANH (2016) Bayesian Modelling of Direct and Indirect Effects of Marine Reserves on Fishes. {PhD}, Massey University, Auckland, New Zealand

Smith ANH, Anderson MJ, Millar RB, Willis TJ (2014) Effects of Marine Reserves in the Context of Spatial and Temporal Variation: An Analysis Using Bayesian Zero-Inflated Mixed Models. Marine Ecology Progress Series 499:203–216.

Smith ANH, Duffy CAJ, Leathwick JR (2013) Predicting the Distribution and Relative Abundance of Fishes on Shallow Subtidal Reefs Around New Zealand. Science for Conservation 323.

Smith ANH, Anderson MJ, Millar RB (2012) Incorporating the Intraspecific Occupancy-Abundance Relationship into Zero-Inflated Models. Ecology 93:2526–2532.

Marchetti MP, Esteban E, Smith ANH, Pickard D, Richards AB, Slusark J (2011) Measuring the Ecological Impact of Long-Term Flow Disturbance on the Macroinvertebrate Community in a Large Mediterranean Climate River. Journal of Freshwater Ecology:1–22.

Marchetti MP, Garr M, Smith ANH (2010) Evaluating Wetland Restoration Success Using Aquatic Macroinvertebrate Assemblages in the Sacramento Valley, California. Restoration Ecology 18:457–466.

Raymond B, Shaffer SA, Sokolov S, Woehler EJ, Costa DP, Einoder L, et al. (2010) Shearwater Foraging in the Southern Ocean: The Roles of Prey Availability and Winds. PLoS ONE 5.

Pinkerton MH, Smith ANH, Raymond B, Hosie GW, Sharp B, Leathwick JR, et al. (2010) Spatial and Seasonal Distribution of Adult Oithona Similis in the Southern Ocean: Predictions Using Boosted Regression Trees. Deep Sea Research Part I: Oceanographic Research Papers 57:469–485.

Breen PA, Smith ANH (2008) The 2007 Assessment for Paua (Haliotis Iris) Stock PAU 5B (Stewart Island). New Zealand Fisheries Assessment Report 6:45.

Brown JA, Smith ANH, Robinson TJ (2008) The Response of Rare Herbaceous Plants to the Removal of Weeds in an Unproductive Environment. Community Ecology 9:53–58.

Powelsland RG, Sharp SE, Smith ANH (2008) Aspects of the Breeding Biology of the Pied Shag (Phalacrocorax Varius) at Makara Beach, Wellington, New Zealand. Notornis 55:69–76.

Smith ANH (2005) Evaluation of the New Zealand Marine Environment Classification for shallow coastal rocky reef fish communities. Master’s thesis, University of Auckland, Auckland, New Zealand

Smith ANH, Westbrooke IM (2004) Changes in Bird Conspicuousness at Pureora Forest. Notornis 51:21–25.

Baker AN, Smith ANH, Pichler FB (2002) Geographical Variation in Hector’s Dolphin: Recognition of New Subspecies of Cephalorhynchus Hectori. Journal of the Royal Society of New Zealand 32:713–727.